IL_9C8K_037

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_037 not in the Motif Atlas

Homologous match to IL_8C3A_439

Geometric discrepancy: 0.2028

The information below is about IL_8C3A_439

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

9C8K|1|1|G|942
9C8K|1|1|U|943
9C8K|1|1|A|944
9C8K|1|1|U|945
*
9C8K|1|1|A|981
9C8K|1|1|G|982
9C8K|1|1|A|983
9C8K|1|1|C|984

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain B

eS1

Chain O

Small ribosomal subunit protein uS11

Chain a

40S ribosomal protein S26