IL_9C8K_038
3D structure
- PDB id
- 9C8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 9C8K|1|1|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9C8K_038 not in the Motif Atlas
- Geometric match to IL_4V88_434
- Geometric discrepancy: 0.1746
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
9C8K|1|1|G|952
9C8K|1|1|C|953
9C8K|1|1|U|954
9C8K|1|1|A|955
9C8K|1|1|G|956
*
9C8K|1|1|C|967
9C8K|1|1|U|968
9C8K|1|1|U|969
9C8K|1|1|G|970
9C8K|1|1|G|971
9C8K|1|1|A|972
9C8K|1|1|C|973
9C8K|1|1|C|974
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain B
- eS1
- Chain O
- Small ribosomal subunit protein uS11
Coloring options: