IL_9C8K_041
3D structure
- PDB id
- 9C8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9C8K_041 not in the Motif Atlas
- Homologous match to IL_8C3A_444
- Geometric discrepancy: 0.2597
- The information below is about IL_8C3A_444
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
9C8K|1|1|C|1098
9C8K|1|1|G|1099
9C8K|1|1|A|1100
9C8K|1|1|U|1101
*
9C8K|1|1|G|1131
9C8K|1|1|C|1132
9C8K|1|1|A|1133
9C8K|1|1|G|1134
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain A
- Small ribosomal subunit protein uS2
- Chain B
- eS1
- Chain N
- uS15
- Chain a
- 40S ribosomal protein S26
Coloring options: