IL_9C8K_046

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

9C8K|1|1|A|1522

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_046 not in the Motif Atlas

Homologous match to IL_8C3A_451

Geometric discrepancy: 0.3587

The information below is about IL_8C3A_451

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_92540.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

32

Unit IDs

9C8K|1|1|G|1235
9C8K|1|1|G|1236
*
9C8K|1|1|C|1521
9C8K|1|1|A|1522
9C8K|1|1|C|1523

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein uS19

Chain S

uS13

Chain f

eS31