IL_9C8K_050

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_050 not in the Motif Atlas

Homologous match to IL_8C3A_454

Geometric discrepancy: 0.2559

The information below is about IL_8C3A_454

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

9C8K|1|1|A|1291
9C8K|1|1|C|1292
9C8K|1|1|A|1293
*
9C8K|1|1|U|1306
9C8K|1|1|U|1307
9C8K|1|1|U|1308

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain M

eS12

Chain d

uS14

Chain f

eS31