IL_9C8K_051

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9C8K|1|1|U|1326

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_051 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.2661

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

9C8K|1|1|G|1325
9C8K|1|1|U|1326
9C8K|1|1|G|1327
*
9C8K|1|1|C|1502
9C8K|1|1|C|1503

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain K

S10_plectin domain-containing protein

Chain d

uS14

Chain f

eS31