IL_9C8K_052
3D structure
- PDB id
- 9C8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGCAU*AUGC
- Length
- 10 nucleotides
- Bulged bases
- 9C8K|1|1|C|1331
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9C8K_052 not in the Motif Atlas
- Geometric match to IL_5J7L_362
- Geometric discrepancy: 0.3448
- The information below is about IL_5J7L_362
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49612.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
9C8K|1|1|G|1328
9C8K|1|1|U|1329
9C8K|1|1|G|1330
9C8K|1|1|C|1331
9C8K|1|1|A|1332
9C8K|1|1|U|1333
*
9C8K|1|1|A|1498
9C8K|1|1|U|1499
9C8K|1|1|G|1500
9C8K|1|1|C|1501
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein uS3
- Chain K
- S10_plectin domain-containing protein
- Chain U
- uS10
- Chain d
- uS14
- Chain f
- eS31
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