IL_9C8K_057

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_057 not in the Motif Atlas

Homologous match to IL_8C3A_459

Geometric discrepancy: 0.336

The information below is about IL_8C3A_459

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_63702.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

13

Unit IDs

9C8K|1|1|U|1347
9C8K|1|1|G|1348
9C8K|1|1|G|1349
*
9C8K|1|1|C|1380
9C8K|1|1|G|1381
9C8K|1|1|A|1382

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain A

Small ribosomal subunit protein uS2

Chain C

40S ribosomal protein uS5

Chain D

40S ribosomal protein uS3

Chain R

Small ribosomal subunit protein eS17