IL_9C8K_061

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_061 not in the Motif Atlas

Geometric match to IL_4E48_006

Geometric discrepancy: 0.2519

The information below is about IL_4E48_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9C8K|1|1|A|1537
9C8K|1|1|C|1538
9C8K|1|1|U|1539
*
9C8K|1|1|A|1594
9C8K|1|1|U|1595
9C8K|1|1|U|1596

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain F

uS7

Chain Q

uS9

Chain S

uS13

Chain T

40S ribosomal protein eS19

Chain Z

eS25