IL_9C8K_067

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_067 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.2391

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9C8K|1|1|G|1702
9C8K|1|1|C|1703
9C8K|1|1|C|1704
9C8K|1|1|C|1705
*
9C8K|1|1|G|1829
9C8K|1|1|U|1830
9C8K|1|1|A|1831
9C8K|1|1|A|1832
9C8K|1|1|C|1833

Current chains

Chain 1

18S ribosomal RNA

Nearby chains