IL_9C8K_069

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_069 not in the Motif Atlas

Homologous match to IL_8P9A_456

Geometric discrepancy: 0.2886

The information below is about IL_8P9A_456

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9C8K|1|1|U|1714
9C8K|1|1|A|1715
9C8K|1|1|C|1716
*
9C8K|1|1|G|1817
9C8K|1|1|A|1818
9C8K|1|1|A|1819

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain X

uS12