IL_9CG6_065

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CG6_065 not in the Motif Atlas

Homologous match to IL_9DFE_001

Geometric discrepancy: 0.1018

The information below is about IL_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22311.1

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

10

Unit IDs

9CG6|1|a|G|24
9CG6|1|a|U|25
9CG6|1|a|G|26
9CG6|1|a|G|27
9CG6|1|a|A|28
9CG6|1|a|U|29
9CG6|1|a|G|30
*
9CG6|1|a|C|510
9CG6|1|a|U|511
9CG6|1|a|G|512
9CG6|1|a|A|513
9CG6|1|a|A|514
9CG6|1|a|A|515
9CG6|1|a|C|516

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32