IL_9CG6_116

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

9CG6|1|a|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CG6_116 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.0742

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9CG6|1|a|C|1437
9CG6|1|a|U|1438
9CG6|1|a|A|1439
9CG6|1|a|U|1440
*
9CG6|1|a|A|1551
9CG6|1|a|A|1552
9CG6|1|a|A|1553
9CG6|1|a|U|1554
9CG6|1|a|G|1555

Current chains

Chain a

23S ribosomal RNA

Nearby chains