IL_9CG6_126

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CG6_126 not in the Motif Atlas

Geometric match to IL_5J7L_386

Geometric discrepancy: 0.0488

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9CG6|1|a|G|1666
9CG6|1|a|G|1667
9CG6|1|a|A|1668
9CG6|1|a|A|1669
9CG6|1|a|C|1670
9CG6|1|a|U|1671
9CG6|1|a|A|1672
9CG6|1|a|G|1673
9CG6|1|a|G|1674
*
9CG6|1|a|C|1990
9CG6|1|a|U|1991
9CG6|1|a|G|1992
9CG6|1|a|U|1993
9CG6|1|a|C|1994

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14