IL_9CG6_162

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CG6_162 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.0703

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9CG6|1|a|C|2652
9CG6|1|a|U|2653
9CG6|1|a|A|2654
9CG6|1|a|G|2655
9CG6|1|a|U|2656
9CG6|1|a|A|2657
9CG6|1|a|C|2658
*
9CG6|1|a|G|2663
9CG6|1|a|G|2664
9CG6|1|a|A|2665
9CG6|1|a|C|2666
9CG6|1|a|C|2667
9CG6|1|a|G|2668

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L6