IL_9CG7_022

3D structure

PDB id

9CG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + AUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CG7_022 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.0912

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

9CG7|1|A|G|450
9CG7|1|A|A|451
9CG7|1|A|A|452
9CG7|1|A|G|453
9CG7|1|A|G|454
9CG7|1|A|G|455
*
9CG7|1|A|C|477
9CG7|1|A|A|478
9CG7|1|A|U|479
9CG7|1|A|U|480
9CG7|1|A|G|481
9CG7|1|A|A|482
9CG7|1|A|C|483

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16