IL_9CG7_055

3D structure

PDB id

9CG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + AUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CG7_055 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0997

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9CG7|1|A|C|1303
9CG7|1|A|G|1304
9CG7|1|A|G|1305
9CG7|1|A|A|1306
9CG7|1|A|U|1307
9CG7|1|A|U|1308
*
9CG7|1|A|A|1329
9CG7|1|A|U|1330
9CG7|1|A|G|1331
9CG7|1|A|A|1332
9CG7|1|A|A|1333
9CG7|1|A|G|1334

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13