IL_9CG7_137

3D structure

PDB id

9CG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + AUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CG7_137 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0679

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9CG7|1|a|U|1851
9CG7|1|a|U|1852
9CG7|1|a|A|1853
9CG7|1|a|A|1854
9CG7|1|a|U|1855
9CG7|1|a|U|1856
9CG7|1|a|G|1857
9CG7|1|a|A|1858
9CG7|1|a|U|1859
9CG7|1|a|G|1860
*
9CG7|1|a|U|1882
9CG7|1|a|U|1883
9CG7|1|a|G|1884
9CG7|1|a|A|1885
9CG7|1|a|U|1886
9CG7|1|a|C|1887
9CG7|1|a|G|1888
9CG7|1|a|A|1889
9CG7|1|a|A|1890
9CG7|1|a|G|1891

Current chains

Chain a

23S ribosomal RNA

Nearby chains