IL_9CGU_005

3D structure

PDB id

9CGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cas9 ternary complex, 14-nt sgRNA, State II (kinked)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

9CGU|1|B|U|59

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CGU_005 not in the Motif Atlas

Geometric match to IL_7Z4D_002

Geometric discrepancy: 0.1094

The information below is about IL_7Z4D_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9CGU|1|B|G|54
9CGU|1|B|C|55
*
9CGU|1|B|G|58
9CGU|1|B|U|59
9CGU|1|B|C|60

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1