IL_9CL9_025

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

UCGGUAAG*CGUUAUAACCGG

Length

20 nucleotides

Bulged bases

9CL9|1|CA|A|83, 9CL9|1|CA|U|99, 9CL9|1|CA|U|100, 9CL9|1|CA|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CL9|1|CA|U|78
9CL9|1|CA|C|79
9CL9|1|CA|G|80
9CL9|1|CA|G|81
9CL9|1|CA|U|82
9CL9|1|CA|A|83
9CL9|1|CA|A|84
9CL9|1|CA|G|85
*
9CL9|1|CA|C|97
9CL9|1|CA|G|98
9CL9|1|CA|U|99
9CL9|1|CA|U|100
9CL9|1|CA|A|101
9CL9|1|CA|U|102
9CL9|1|CA|A|103
9CL9|1|CA|A|104
9CL9|1|CA|C|105
9CL9|1|CA|C|106
9CL9|1|CA|G|107
9CL9|1|CA|G|108

Current chains

Chain CA

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL24

Chain Y

Large ribosomal subunit protein uL29