IL_9CL9_026

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

AGCUAAGGUC*GGCUAAACCAUGCACCGAAGCU

Length

32 nucleotides

Bulged bases

9CL9|1|CA|U|1141, 9CL9|1|CA|A|1143, 9CL9|1|CA|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CL9|1|CA|A|996
9CL9|1|CA|G|997
9CL9|1|CA|C|998
9CL9|1|CA|U|999
9CL9|1|CA|A|1000
9CL9|1|CA|A|1001
9CL9|1|CA|G|1002
9CL9|1|CA|G|1003
9CL9|1|CA|U|1004
9CL9|1|CA|C|1005
*
9CL9|1|CA|G|1138
9CL9|1|CA|G|1139
9CL9|1|CA|C|1140
9CL9|1|CA|U|1141
9CL9|1|CA|A|1142
9CL9|1|CA|A|1143
9CL9|1|CA|A|1144
9CL9|1|CA|C|1145
9CL9|1|CA|C|1146
9CL9|1|CA|A|1147
9CL9|1|CA|U|1148
9CL9|1|CA|G|1149
9CL9|1|CA|C|1150
9CL9|1|CA|A|1151
9CL9|1|CA|C|1152
9CL9|1|CA|C|1153
9CL9|1|CA|G|1154
9CL9|1|CA|A|1155
9CL9|1|CA|A|1156
9CL9|1|CA|G|1157
9CL9|1|CA|C|1158
9CL9|1|CA|U|1159

Current chains

Chain CA

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain Q

Large ribosomal subunit protein bL20

Chain R

Large ribosomal subunit protein bL21