IL_9CL9_030

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

CAUCACUGGUGUUCGGGUUGU*GCACUGCCCGGUAGCUAAAUG

Length

42 nucleotides

Bulged bases

9CL9|1|CA|C|2681, 9CL9|1|CA|U|2689, 9CL9|1|CA|U|2690, 9CL9|1|CA|C|2712, 9CL9|1|CA|U|2713, 9CL9|1|CA|A|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CL9|1|CA|C|2678
9CL9|1|CA|A|2679
9CL9|1|CA|U|2680
9CL9|1|CA|C|2681
9CL9|1|CA|A|2682
9CL9|1|CA|C|2683
9CL9|1|CA|U|2684
9CL9|1|CA|G|2685
9CL9|1|CA|G|2686
9CL9|1|CA|U|2687
9CL9|1|CA|G|2688
9CL9|1|CA|U|2689
9CL9|1|CA|U|2690
9CL9|1|CA|C|2691
9CL9|1|CA|G|2692
9CL9|1|CA|G|2693
9CL9|1|CA|G|2694
9CL9|1|CA|U|2695
9CL9|1|CA|U|2696
9CL9|1|CA|G|2697
9CL9|1|CA|U|2698
*
9CL9|1|CA|G|2709
9CL9|1|CA|C|2710
9CL9|1|CA|A|2711
9CL9|1|CA|C|2712
9CL9|1|CA|U|2713
9CL9|1|CA|G|2714
9CL9|1|CA|C|2715
9CL9|1|CA|C|2716
9CL9|1|CA|C|2717
9CL9|1|CA|G|2718
9CL9|1|CA|G|2719
9CL9|1|CA|U|2720
9CL9|1|CA|A|2721
9CL9|1|CA|G|2722
9CL9|1|CA|C|2723
9CL9|1|CA|U|2724
9CL9|1|CA|A|2725
9CL9|1|CA|A|2726
9CL9|1|CA|A|2727
9CL9|1|CA|U|2728
9CL9|1|CA|G|2729

Current chains

Chain CA

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3