IL_9CN3_035

3D structure

PDB id

9CN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 39S mitoribosome in complex with antibiotic Linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CAUAAUCACUUG*CCUG

Length

16 nucleotides

Bulged bases

9CN3|1|A|U|2599, 9CN3|1|A|A|2601, 9CN3|1|A|U|2607, 9CN3|1|A|U|2626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CN3_035 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.5651

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

9CN3|1|A|C|2597
9CN3|1|A|A|2598
9CN3|1|A|U|2599
9CN3|1|A|A|2600
9CN3|1|A|A|2601
9CN3|1|A|U|2602
9CN3|1|A|C|2603
9CN3|1|A|A|2604
9CN3|1|A|C|2605
9CN3|1|A|U|2606
9CN3|1|A|U|2607
9CN3|1|A|G|2608
*
9CN3|1|A|C|2624
9CN3|1|A|C|2625
9CN3|1|A|U|2626
9CN3|1|A|G|2627

Current chains

Chain A

16S rRNA

Nearby chains