IL_9CPA_009

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

9CPA|1|2|G|113, 9CPA|1|2|G|114

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_009 not in the Motif Atlas

Geometric match to IL_8P9A_381

Geometric discrepancy: 0.1717

The information below is about IL_8P9A_381

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

9CPA|1|2|U|112
9CPA|1|2|G|113
9CPA|1|2|G|114
9CPA|1|2|U|115
*
9CPA|1|2|A|338
9CPA|1|2|A|339

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain K

Small ribosomal subunit protein eS8

Chain N

Ribosomal protein S11