IL_9CPA_010

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_010 not in the Motif Atlas

Geometric match to IL_8CRE_399

Geometric discrepancy: 0.1708

The information below is about IL_8CRE_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9CPA|1|2|U|116
9CPA|1|2|C|117
9CPA|1|2|C|118
9CPA|1|2|U|119
9CPA|1|2|U|120
9CPA|1|2|U|121
*
9CPA|1|2|A|333
9CPA|1|2|U|334
9CPA|1|2|U|335
9CPA|1|2|C|336
9CPA|1|2|G|337

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain K

Small ribosomal subunit protein eS8