IL_9CPA_021

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

9CPA|1|2|U|358, 9CPA|1|2|C|359

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_021 not in the Motif Atlas

Geometric match to IL_8P9A_392

Geometric discrepancy: 0.1481

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

9CPA|1|2|U|356
9CPA|1|2|U|357
9CPA|1|2|U|358
9CPA|1|2|C|359
9CPA|1|2|G|360
9CPA|1|2|A|361
*
9CPA|1|2|U|383
9CPA|1|2|G|384

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein eS8

Chain N

Ribosomal protein S11