IL_9CPA_028

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CAGGAC*GGCCCUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CPA|1|2|C|522
9CPA|1|2|A|523
9CPA|1|2|G|524
9CPA|1|2|G|525
9CPA|1|2|A|526
9CPA|1|2|C|527
*
9CPA|1|2|G|536
9CPA|1|2|G|537
9CPA|1|2|C|538
9CPA|1|2|C|539
9CPA|1|2|C|540
9CPA|1|2|U|541
9CPA|1|2|G|542

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein S9 (Predicted)

Chain h

ATP-dependent RNA helicase DHX29

Chain i

40S ribosomal protein S30

Chain p

eukaryotic translation initiation factor 3 subunit b