IL_9CPA_029

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

9CPA|1|2|A|580, 9CPA|1|2|U|581

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CPA|1|2|G|553
9CPA|1|2|A|554
9CPA|1|2|G|555
*
9CPA|1|2|C|575
9CPA|1|2|G|576
9CPA|1|2|A|577
9CPA|1|2|G|578
9CPA|1|2|G|579
9CPA|1|2|A|580
9CPA|1|2|U|581
9CPA|1|2|C|582

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein S9 (Predicted)

Chain h

ATP-dependent RNA helicase DHX29

Chain i

40S ribosomal protein S30