IL_9CPA_035

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

9CPA|1|2|A|658

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_035 not in the Motif Atlas

Geometric match to IL_8CRE_424

Geometric discrepancy: 0.1491

The information below is about IL_8CRE_424

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9CPA|1|2|G|655
9CPA|1|2|U|656
9CPA|1|2|U|657
9CPA|1|2|A|658
9CPA|1|2|A|659
9CPA|1|2|A|660
9CPA|1|2|A|661
*
9CPA|1|2|U|1157
9CPA|1|2|C|1158

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Z

uS12

Chain b

40S ribosomal protein S26