IL_9CPA_041

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CCUCU*AAG

Length

8 nucleotides

Bulged bases

9CPA|1|2|C|744

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_041 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.3993

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86407.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9CPA|1|2|C|741
9CPA|1|2|C|742
9CPA|1|2|U|743
9CPA|1|2|C|744
9CPA|1|2|U|745
*
9CPA|1|2|A|790
9CPA|1|2|A|791
9CPA|1|2|G|792

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain I

40S ribosomal protein S6

Chain J

40S ribosomal protein S7

Chain N

Ribosomal protein S11