IL_9CPA_045
3D structure
- PDB id
- 9CPA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9CPA_045 not in the Motif Atlas
- Homologous match to IL_9H3G_194
- Geometric discrepancy: 0.2159
- The information below is about IL_9H3G_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.5
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9CPA|1|2|G|803
9CPA|1|2|A|804
9CPA|1|2|A|805
9CPA|1|2|A|806
9CPA|1|2|A|807
9CPA|1|2|A|808
9CPA|1|2|A|809
9CPA|1|2|U|810
9CPA|1|2|U|811
*
9CPA|1|2|A|845
9CPA|1|2|C|846
9CPA|1|2|C|847
9CPA|1|2|G|848
9CPA|1|2|C|849
9CPA|1|2|A|850
9CPA|1|2|G|851
9CPA|1|2|C|852
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S4
- Chain L
- Ribosomal protein S9 (Predicted)
- Chain N
- Ribosomal protein S11
- Chain Y
- Ribosomal protein S15a
Coloring options: