IL_9CPA_055

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_055 not in the Motif Atlas

Geometric match to IL_8P9A_423

Geometric discrepancy: 0.1229

The information below is about IL_8P9A_423

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31359.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9CPA|1|2|A|1038
9CPA|1|2|G|1039
9CPA|1|2|G|1040
9CPA|1|2|U|1041
9CPA|1|2|U|1042
9CPA|1|2|C|1043
*
9CPA|1|2|G|1067
9CPA|1|2|U|1068
9CPA|1|2|U|1069

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

Small ribosomal subunit protein uS11

Chain b

40S ribosomal protein S26