IL_9CPA_056

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_056 not in the Motif Atlas

Geometric match to IL_5J7L_037

Geometric discrepancy: 0.0791

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9CPA|1|2|C|1043
9CPA|1|2|G|1044
9CPA|1|2|A|1045
9CPA|1|2|A|1046
9CPA|1|2|G|1047
*
9CPA|1|2|C|1063
9CPA|1|2|G|1064
9CPA|1|2|U|1065
9CPA|1|2|A|1066
9CPA|1|2|G|1067

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

Small ribosomal subunit protein uS11

Chain b

40S ribosomal protein S26