IL_9CPA_066

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GCC*GU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_066 not in the Motif Atlas

Geometric match to IL_4WF9_047

Geometric discrepancy: 0.1628

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

9CPA|1|2|G|1266
9CPA|1|2|C|1267
9CPA|1|2|C|1268
*
9CPA|1|2|G|1506
9CPA|1|2|U|1507

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

S10_plectin domain-containing protein

Chain R

uS19

Chain e

eS29

Chain f

Ribosomal protein S27a