IL_9CPA_070

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_070 not in the Motif Atlas

Geometric match to IL_8P9A_436

Geometric discrepancy: 0.2413

The information below is about IL_8P9A_436

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38565.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

9CPA|1|2|A|1287
9CPA|1|2|C|1288
9CPA|1|2|A|1289
*
9CPA|1|2|U|1302
9CPA|1|2|U|1303
9CPA|1|2|U|1304

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

uS19

Chain e

eS29

Chain f

Ribosomal protein S27a