IL_9CPA_071

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9CPA|1|2|U|1322

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_071 not in the Motif Atlas

Geometric match to IL_8CRE_451

Geometric discrepancy: 0.1498

The information below is about IL_8CRE_451

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9CPA|1|2|G|1321
9CPA|1|2|U|1322
9CPA|1|2|G|1323
*
9CPA|1|2|C|1498
9CPA|1|2|C|1499

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

S10_plectin domain-containing protein

Chain e

eS29

Chain f

Ribosomal protein S27a