IL_9CPA_075

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9CPA|1|2|A|1485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_075 not in the Motif Atlas

Geometric match to IL_8CRE_455

Geometric discrepancy: 0.1782

The information below is about IL_8CRE_455

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

9CPA|1|2|C|1333
9CPA|1|2|G|1334
*
9CPA|1|2|C|1484
9CPA|1|2|A|1485
9CPA|1|2|G|1486

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain F

Ribosomal protein S3

Chain S

uS9

Chain W

uS10

Chain e

eS29