IL_9CPA_079

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

9CPA|1|2|C|1399, 9CPA|1|2|U|1400

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_079 not in the Motif Atlas

Geometric match to IL_8CRE_481

Geometric discrepancy: 0.213

The information below is about IL_8CRE_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

9CPA|1|2|A|1398
9CPA|1|2|C|1399
9CPA|1|2|U|1400
9CPA|1|2|A|1401
*
9CPA|1|2|U|1437
9CPA|1|2|U|1438
9CPA|1|2|C|1439
9CPA|1|2|U|1440

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

uS9

Chain W

uS10

Chain g

RACK1