IL_9CPA_084

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_084 not in the Motif Atlas

Geometric match to IL_3GM7_002

Geometric discrepancy: 0.1069

The information below is about IL_3GM7_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9CPA|1|2|A|1532
9CPA|1|2|C|1533
9CPA|1|2|U|1534
*
9CPA|1|2|A|1589
9CPA|1|2|U|1590
9CPA|1|2|U|1591

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

Small ribosomal subunit protein uS7

Chain S

uS9

Chain U

uS13

Chain V

eS19

Chain n

eS25