IL_9CPA_085

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GCUCAGCGUG*CCGUUGAACCC

Length

21 nucleotides

Bulged bases

9CPA|1|2|U|1580, 9CPA|1|2|G|1582

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CPA|1|2|G|1536
9CPA|1|2|C|1537
9CPA|1|2|U|1538
9CPA|1|2|C|1539
9CPA|1|2|A|1540
9CPA|1|2|G|1541
9CPA|1|2|C|1542
9CPA|1|2|G|1543
9CPA|1|2|U|1544
9CPA|1|2|G|1545
*
9CPA|1|2|C|1577
9CPA|1|2|C|1578
9CPA|1|2|G|1579
9CPA|1|2|U|1580
9CPA|1|2|U|1581
9CPA|1|2|G|1582
9CPA|1|2|A|1583
9CPA|1|2|A|1584
9CPA|1|2|C|1585
9CPA|1|2|C|1586
9CPA|1|2|C|1587

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein S3

Chain H

Small ribosomal subunit protein uS7

Chain S

uS9

Chain V

eS19

Chain W

uS10

Chain e

eS29

Chain n

eS25