IL_9CPA_086

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

9CPA|1|2|C|1548, 9CPA|1|2|A|1551, 9CPA|1|2|C|1552, 9CPA|1|2|A|1575, 9CPA|1|2|C|1576

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CPA|1|2|G|1545
9CPA|1|2|U|1546
9CPA|1|2|G|1547
9CPA|1|2|C|1548
9CPA|1|2|C|1549
9CPA|1|2|U|1550
9CPA|1|2|A|1551
9CPA|1|2|C|1552
9CPA|1|2|C|1553
*
9CPA|1|2|G|1572
9CPA|1|2|U|1573
9CPA|1|2|A|1574
9CPA|1|2|A|1575
9CPA|1|2|C|1576
9CPA|1|2|C|1577

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein S3

Chain M

S10_plectin domain-containing protein

Chain V

eS19

Chain W

uS10

Chain e

eS29