IL_9CPA_090

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_090 not in the Motif Atlas

Geometric match to IL_4LFB_068

Geometric discrepancy: 0.1129

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9CPA|1|2|G|1697
9CPA|1|2|C|1698
9CPA|1|2|C|1699
9CPA|1|2|C|1700
*
9CPA|1|2|G|1823
9CPA|1|2|U|1824
9CPA|1|2|A|1825
9CPA|1|2|A|1826
9CPA|1|2|C|1827

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain l

eL41