IL_9CPA_094

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_094 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1512

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9CPA|1|2|C|1712
9CPA|1|2|G|1713
9CPA|1|2|A|1714
9CPA|1|2|U|1715
*
9CPA|1|2|A|1807
9CPA|1|2|G|1808
9CPA|1|2|A|1809
9CPA|1|2|G|1810

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Z

uS12

Chain l

eL41