IL_9CXF_004

3D structure

PDB id

9CXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Rail RNA motif

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GGUGCGGCUUAGAAGUAAG*CGAGUGUGGGGUC

Length

32 nucleotides

Bulged bases

9CXF|1|A|G|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CXF|1|A|G|83
9CXF|1|A|G|84
9CXF|1|A|U|85
9CXF|1|A|G|86
9CXF|1|A|C|87
9CXF|1|A|G|88
9CXF|1|A|G|89
9CXF|1|A|C|90
9CXF|1|A|U|91
9CXF|1|A|U|92
9CXF|1|A|A|93
9CXF|1|A|G|94
9CXF|1|A|A|95
9CXF|1|A|A|96
9CXF|1|A|G|97
9CXF|1|A|U|98
9CXF|1|A|A|99
9CXF|1|A|A|100
9CXF|1|A|G|101
*
9CXF|1|A|C|169
9CXF|1|A|G|170
9CXF|1|A|A|171
9CXF|1|A|G|172
9CXF|1|A|U|173
9CXF|1|A|G|174
9CXF|1|A|U|175
9CXF|1|A|G|176
9CXF|1|A|G|177
9CXF|1|A|G|178
9CXF|1|A|G|179
9CXF|1|A|U|180
9CXF|1|A|C|181

Current chains

Chain A

RNA (200-MER)

Nearby chains