IL_9CXF_006

3D structure

PDB id

9CXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Rail RNA motif

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

9CXF|1|A|A|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CXF_006 not in the Motif Atlas

Geometric match to IL_5J7L_261

Geometric discrepancy: 0.2928

The information below is about IL_5J7L_261

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9CXF|1|A|G|120
9CXF|1|A|A|121
9CXF|1|A|G|122
*
9CXF|1|A|C|161
9CXF|1|A|C|162

Current chains

Chain A

RNA (200-MER)

Nearby chains