IL_9D0G_255

3D structure

PDB id

9D0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

9D0G|1|2A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D0G_255 not in the Motif Atlas

Geometric match to IL_5Y7M_008

Geometric discrepancy: 0.3995

The information below is about IL_5Y7M_008

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9D0G|1|2A|C|2129
9D0G|1|2A|U|2130
9D0G|1|2A|G|2131
9D0G|1|2A|U|2132
9D0G|1|2A|G|2133
9D0G|1|2A|A|2134
9D0G|1|2A|A|2135
9D0G|1|2A|C|2136
*
9D0G|1|2A|G|2155
9D0G|1|2A|G|2156
9D0G|1|2A|G|2157
9D0G|1|2A|A|2158
9D0G|1|2A|G|2159

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains