IL_9D0G_323

3D structure

PDB id

9D0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

9D0G|1|2a|C|1200, 9D0G|1|2a|A|1201

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D0G_323 not in the Motif Atlas

Geometric match to IL_8B0X_047

Geometric discrepancy: 0.1694

The information below is about IL_8B0X_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9D0G|1|2a|G|1057
9D0G|1|2a|G|1058
*
9D0G|1|2a|U|1199
9D0G|1|2a|C|1200
9D0G|1|2a|A|1201
9D0G|1|2a|G|1202
9D0G|1|2a|C|1203

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z