IL_9D0I_058

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

9D0I|1|1A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D0I_058 not in the Motif Atlas

Geometric match to IL_9DFE_062

Geometric discrepancy: 0.0673

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9D0I|1|1A|G|1526
9D0I|1|1A|G|1527
9D0I|1|1A|A|1528
9D0I|1|1A|A|1528|||A
9D0I|1|1A|G|1529
*
9D0I|1|1A|U|1540
9D0I|1|1A|G|1541
9D0I|1|1A|A|1542
9D0I|1|1A|C|1543
9D0I|1|1A|A|1544
9D0I|1|1A|A|1545
9D0I|1|1A|C|1546

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains