IL_9D0I_082

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

9D0I|1|1A|C|2164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D0I_082 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.3623

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

9D0I|1|1A|G|2124
9D0I|1|1A|G|2125
9D0I|1|1A|A|2126
9D0I|1|1A|G|2127
*
9D0I|1|1A|C|2161
9D0I|1|1A|G|2162
9D0I|1|1A|C|2163
9D0I|1|1A|C|2164
9D0I|1|1A|G|2165
9D0I|1|1A|G|2166
9D0I|1|1A|U|2167
9D0I|1|1A|G|2168
9D0I|1|1A|A|2169
9D0I|1|1A|A|2170
9D0I|1|1A|A|2171
9D0I|1|1A|U|2172
9D0I|1|1A|A|2173
9D0I|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA