IL_9D0I_318

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

9D0I|1|2a|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D0I_318 not in the Motif Atlas

Geometric match to IL_8B0X_040

Geometric discrepancy: 0.147

The information below is about IL_8B0X_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9D0I|1|2a|G|933
9D0I|1|2a|C|934
9D0I|1|2a|A|935
*
9D0I|1|2a|U|1380
9D0I|1|2a|U|1381
9D0I|1|2a|C|1382
9D0I|1|2a|C|1383
9D0I|1|2a|C|1384

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2v

MF-mRNA

Chain 2x

Transfer RNA; tRNA

Chain 2y

Transfer RNA; tRNA